In response to amino acids yeast FLCN-FNIP orthologues Lst7-Lst4 stimulate TORC1 activity

In eukaryotic cells TORC1 signalling has a key role in controlling cell growth in response to nutritional status. Folliculin (FLCN) and the FNIP proteins regulate mTORC signalling via interactions with Rag family GTPases (Petit et al., 2013, Tsun et al., 2012). Recently Péli-Gulli et al. (2015) reported that the yeast orthologues of FLCN and FNIP, Lst7 and Lst4, form a heterodimer that acts as a GTPase Activating Protein (GAP) for yeast Rag family GTPase Gtr2 . Lst4-Lst7 is the first GAP identified for Gtr2.

Rag family GTPases are heterodimers that cycle between an active and inactive state. In the active stimulating state, GTP is bound to RagA or RagB in mammals, or Gtr1 in yeast, and GDP is bound to RagC or RagD in mammals, or Gtr2 in yeast. Regulating and maintaining these GTP/GDP associations relies on interplay between distinct Guanine nucleotide Exchange Factors (GEFs) and GAPs.

During amino acid starvation TORC1 activity is vastly reduced, and only upregulated upon readdition of amino acids. Péli-Gulli et al. found that loss of either or both Lst4 and Lst7 similarly reduced TORC1 activity after amino acid readdition indicative of a shared biological role in amino acid stimulation of TORC1. Using mutant, GTP-locked variants of Gtr1 and Gtr2 it was determined that Lst4 and Lst7 specifically act upstream of Gtr2.

Péli-Gulli et al. used co-immunoprecipitation assays to confirm direct binding between Lst4 and Lst7.  They showed that, under normal conditions, the Lst4-Lst7 heterodimer is mostly cytoplasmic, but that during amino acid starvation is rapidly recruited to the vacuolar membrane where it is adjacent to, but not associated with, Gtr2. Following amino acid readdition, Lst-4-LSt7 interacts with Gtr2, TORC1 is activated, and Lst4-Lst7 is released from the membrane (Figure 1). Additional TORC1 activity inhibits Lst4-Lst7 localisation to the vacuolar membrane, creating a negative feedback loop. Lst4-Lst7 is a Gtr2-specific GAP and cannot stimulate Gtr1 GTP hydrolysis.

Yeast GTPase3

Figure 1: In yeast cells Lst7-Lst4 is recruited to the vacuolar membrane during amino acid starvation. Following readdition of amino acids Lst7-Lst4 act as a GAP for the GTPase Gtr2 stimulating hydrolysis of bound GTP to GDP. The Rag GTPases can then stimulate TORC1 activity. The Lst7-Lst4 heterodimer is then released into the cytoplasm.

Interestingly, in mammalian cells FLCN helps to regulate both RagA/B and RagC. Petit et al., (2013) reported that FLCN-FNIP1 complexes preferentially bind to GDP-loaded RagA/B, acting as a GEF to stimulate mTORC1 signalling. In contrast Tsun et al., (2012) reported that FLCN-FNIP2 complexes acts as a GAP for RagC to induce mTOR signalling (Figure 2).

Mammal GTPase3


Figure 2: In mammalian cells FLCN-FNIP2 is recruited to the vacuolar membrane during amino acid starvation. Following readdition of amino acids FLCN-FNIP2 act as a GAP for the GTPase RagC stimulating hydrolysis of bound GTP to GDP. FLCN-FNIP1 are a GEF for the GTPase RagA or RagB facilitating the release GDP and binding of GTP. The Rag GTPases can then stimulate mTORC1 activity.

The distinction between FNIP1 and FNIP2 in these complexes could explain the different functions with specific Rag family GTPases. In addition different FLCN domains might be associated with different functions: the C-terminal of FLCN contains a DENN domain (Nookala et al., 2012), a domain typically found in GEFs, whilst Tsun et al. showed that it was the N-terminal domains of FLCN that were required for GAP activity. As the yeast FLCN orthologue Lst7 does not contain the DENN domain, and Lst4 is the only identified FNIP orthologue, it may be only the role for FLCN-FNIP as a RagC/Gtr2 GAP that is conserved.

More research is required to determine how these roles for FLCN and FNIP in regulating amino acid induced TORC1 signalling are related to BHD pathology. Further understanding of the impact of FLCN loss on this regulation and the effects on cell growth could identify new research avenues and therapeutic targets.

  • Nookala RK, Langemeyer L, Pacitto A, Ochoa-Montaño B, Donaldson JC, Blaszczyk BK, Chirgadze DY, Barr FA, Bazan JF, Blundell TL (2012). Crystal structure of folliculin reveals a hidDENN function in genetically inherited renal cancer. Open Biol. Aug;2(8):120071. PMID: 22977732.
  • Péli-Gulli MP, Sardu A, Panchaud N, Raucci S, & De Virgilio C (2015). Amino Acids Stimulate TORC1 through Lst4-Lst7, a GTPase-Activating Protein Complex for the Rag Family GTPase Gtr2. Cell reports, 13 (1), 1-7 PMID: 26387955.
  • Petit CS, Roczniak-Ferguson A, Ferguson SM (2013). Recruitment of folliculin to lysosomes supports the amino acid-dependent activation of Rag GTPases. J Cell Biol. Sep 30;202(7):1107-22. PMID: 24081491.
  • Tsun ZY, Bar-Peled L, Chantranupong L, Zoncu R, Wang T, Kim C, Spooner E, Sabatini DM (2013). The folliculin tumor suppressor is a GAP for the RagC/D GTPases that signal amino acid levels to mTORC1. Mol Cell. Nov 21;52(4):495-505. PMID: 24095279.
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